Mathematics and Statistics of Genomic Epidemiology
Videos from CMO Workshop
Sally Otto, University of British Columbia
Monday Nov 7, 2022 09:30 - 10:37
SARS-CoV-2, an evolving pandemic
Daniel Weissman, Emory University
Monday Nov 7, 2022 11:00 - 11:29
Crhonic infections likely drive SARS-CoV-2 adaptation
Marina Escalera-Zamudio, University of Oxford
Monday Nov 7, 2022 11:30 - 12:01
Comparing the evolutionary dynamics of predominant SARS-Cov-2 virus lineages co-circulating in Mexico
David Rasmussen, NC State
Monday Nov 7, 2022 14:00 - 14:32
Designing optimal sampling strategies for pathogen genomic surveillance using reinforcement
Jesse Shapiro, University of Montreal/McGill University
Monday Nov 7, 2022 15:00 - 15:32
Genome-wide association of convergent mutations with SARS-CoV-2 animal host preference
Yeongseon Park, Emory University
Monday Nov 7, 2022 15:30 - 16:10
Epidemiological inference virus lineages using segregating sites
Hongzhe Li, University of Pennsylvania
Tuesday Nov 8, 2022 09:30 - 09:58
Deep learning to predict the biosynthetic gene clusters in bacterial genomes
Jingyi Jessica Li, University of California Los Angeles
Tuesday Nov 8, 2022 10:00 - 10:26
PCA outperforms popular hidden variable inference methods for QTL mapping
ZhengZheng Tang, University of Wisconsin Madison
Tuesday Nov 8, 2022 11:00 - 11:29
Multi-trait analysis of rare-variant association summary statistics using MTAR
Xiang Zhou, University of Michigan
Tuesday Nov 8, 2022 11:30 - 11:58
Likelihood-based Mendelian randomization analysis with automated instrument selection and horizontal pleiotropic modeling
Xavier Didelot, University of Warwick
Tuesday Nov 8, 2022 13:30 - 14:00
Detecting imported cases within a geographically limited genomic sample of an infectious disease
Celia Greenwood, Lady Davis Institute for Medical Research
Tuesday Nov 8, 2022 14:00 - 14:33
Two kinds of over-dispersion affect regional DNA methylation patterns
Madikay Senghore, Harvard School of Public Health
Tuesday Nov 8, 2022 15:00 - 15:29
Beyond consensus sequence - a quantitative scheme for inferring transmission using deep sequencing in a bacterial transmission model
Joshua Herbeck, Bill & Melinda Gates Foundation
Wednesday Nov 9, 2022 10:00 - 10:34
Are HIV genetic clusters enriched with transmitters?
Olivier Gascuel, Centre National de la Recherche Scientifique & Muséum National d'Histoire Naturelle
Wednesday Nov 9, 2022 11:00 - 11:30
Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks
Ailene MacPherson, Simon Fraser University
Wednesday Nov 9, 2022 11:30 - 11:59
Assumptions and Identifiability of Phylodynamic Inference
Ashley Cooper, CFIA
Thursday Nov 10, 2022 09:30 - 09:55
Investigating the limits of detection of AMR in agri-food metagenomic samples
Leonid Chindelevitch, Imperial College, London
Thursday Nov 10, 2022 10:00 - 10:37
Compiling all publicly available genotype-phenotype data on AMR
John Lees, EMBL-EBI
Thursday Nov 10, 2022 11:00 - 11:32
Bigger is better? Solving problems while working with hundreds of thousands of bacterial genomes
Maxwell Libbrecht, SFU
Thursday Nov 10, 2022 11:30 - 12:08
Accurate and interpretable prediction of drug resistance in M. tuberculosis using deep learning
Diana Haider, Dalhousie
Thursday Nov 10, 2022 13:30 - 14:00
Different quality thresholds impact the interpretation of measurements of mock microbial communities
Itsik Pe'er, Columbia University
Thursday Nov 10, 2022 14:00 - 14:26
Probabilistic Models for Microbiome Dynamics
Rohan Mehta, Emory
Friday Nov 11, 2022 09:45 - 10:00
Detecting patterns of accessory genome coevolution in bacterial species using data from thousands of bacterial genomes
Abayomi Olabode, Western University
Friday Nov 11, 2022 10:00 - 10:18
Revisiting the recombinant history of HIV-1 group M with dynamic network community detection
Leonhardt Unruh, Imperial College
Friday Nov 11, 2022 10:15 - 10:31
Inferring bacterial strains in metagenomic data
