Statistical and Computational Challenges in High-Throughput Genomics with Application to Precision Medicine
Videos from CMO Workshop
Maria Avila, UNAM
Monday Nov 5, 2018 09:03 - 09:29
Afromexico genomics project: The genetic ancestry and health of the Afrodescendant population of Mexico.
Ingo Ruczinski, Johns Hopkins Bloomberg School of Public Health
Monday Nov 5, 2018 10:10 - 10:34
Inferring rare disease risk variants based on exact probabilities of sharing among multiple affected relatives.
Chad Huff, MD Anderson Cancer Center
Monday Nov 5, 2018 11:05 - 11:31
Genomic analysis tools for familial and case-control sequencing association studies.
Alejandra Eugenia Medina Rivera, Universidad Nacional Autonoma de Mexico
Monday Nov 5, 2018 11:34 - 12:02
Characterizing the effect of genetic variants within promoters with distal enhancer functions.
Mark Segal, UCSF
Monday Nov 5, 2018 12:05 - 12:36
A principle curve approach to three-dimensional chromatin configuration reconstruction.
Arjun Baghela, University of British Columbia
Monday Nov 5, 2018 15:39 - 15:53
Machine learning approaches to classify patients progressing to sepsis.
Benilton Carvalho, State University Campinas
Monday Nov 5, 2018 16:03 - 16:35
Brazilian initiative on precision medicine: statistical perspectives.
Venkatraman Seshan, Memorial Sloan Kettering Cancer Center
Monday Nov 5, 2018 17:04 - 17:34
Copy number analysis of circulating cell-free DNA.
Kai Kammers, Johns Hopkins University
Tuesday Nov 6, 2018 09:00 - 09:23
Novel and concordant eQTLs from analysis of iPSC-derived megakaryocytes and platelets in the GeneticStudies of Atherosclerosis Risk (GeneSTAR) project.
Ana Beatriz Altamirano, Universidad Nacional Autonoma de Mexico
Tuesday Nov 6, 2018 09:32 - 09:51
PulmonDB: a gene expression lung diseases database.
Pei Wang, Icahn School of Medicine at Mount Sinai
Tuesday Nov 6, 2018 10:00 - 10:29
A new method to study the change of miRNAmRNA interactions due to environmental exposures.
Andrew McDavid, Ozette Technologies
Tuesday Nov 6, 2018 11:03 - 11:28
Combining immune cell repertoire sequencing and functional expression with applications to autoimmune disease.
Kasper Hansen, Johns Hopkins University
Tuesday Nov 6, 2018 11:35 - 12:03
Co-expression patterns define epigenetic regulators associated with neurological dysfunction.
Nuno Luis Barbosa-Morais, Instituto de Medicina Molecular João Lobo Antunes
Tuesday Nov 6, 2018 12:08 - 12:36
Biologist-intelligible alternative splicing analysis of RNA-seq data.
Paul Scheet, MD Anderson Cancer Center
Tuesday Nov 6, 2018 15:03 - 15:31
Genomic profiling of normal, premalignant and heterogeneous tissues in cancer patients.
Shrabanti Chowdhury, Icahn School of Medicine at Mount Sinai
Tuesday Nov 6, 2018 15:35 - 16:02
Proteogenomic analysis of carboplatin response in ovarian cancer cell lines and PDX models.
Kelly Street, UC Berkeley
Tuesday Nov 6, 2018 16:07 - 16:31
Statistical methods and software for the study of stem cell differentiation using single-cell transcriptome sequencing.
Sohrab Shah, Memorial Sloan Kettering Cancer Center
Tuesday Nov 6, 2018 17:05 - 17:32
Single cell whole genome sequencing for population genetic inference of cancer dynamics.
Mattew Ritchie, The Walter and Eliza Hall Institute of Medical Research
Tuesday Nov 6, 2018 17:41 - 18:06
Design and analysis of a single cell RNA-seq benchmarking dataset to compare protocols and methods.
Patrick Kimes, Dana-Farber Cancer Institute
Wednesday Nov 7, 2018 09:03 - 09:31
Reproducible and replicable comparisons of methods controlling false discoveries in computational biology.
Gabriela Cohen-Freue, University of British Columbia
Wednesday Nov 7, 2018 09:36 - 10:04
Regularized instrumental variables estimators for disease classification.
Aki Nishimura, UCLA
Thursday Nov 8, 2018 09:03 - 09:27
Bayesian sparse regression and variable selection for large data with weak signals.
Ingo Ruczinski, Johns Hopkins Bloomberg School of Public Health
Thursday Nov 8, 2018 09:06 - 09:38
Detection of de novo copy number deletions from targeted sequencing of trios
Maribel Hernandez-Rosales, Center for Research and Advanced Studies
Thursday Nov 8, 2018 09:32 - 10:00
Mutational dynamics in the mouse mitochondrial genome.
Benilton Carvalho, State University Campinas
Thursday Nov 8, 2018 09:44 - 10:10
TBA - The Brazilian Approach
Jean Yee Hwa Yang, The University of Sydney
Thursday Nov 8, 2018 10:14 - 10:47
Exploring single cell data
Katherine Hoadley, University of North Carolina
Thursday Nov 8, 2018 11:03 - 11:33
Integrative genomic analyses of TCGA pan-cancer data.
Jean Yee Hwa Yang, The University of Sydney
Thursday Nov 8, 2018 11:34 - 12:00
Multi-omics integration for identifying prognostic biomarkers in complex disease.
Ellis Patrick, The University of Sydney
Thursday Nov 8, 2018 12:09 - 12:33
Feature selection using differential correlation across ranked samples.
Rob Scharpf, Johns Hopkins University
Thursday Nov 8, 2018 15:02 - 15:28
Integrated genomic analyses of ovarian cancer cell lines to predict drug sensitivity.
Sara Mostafavi, University of Washington
Thursday Nov 8, 2018 15:34 - 15:58
Combining heterogeneous genomics data to understand complex human traits.
Kimberly Siegmund, University of Southern California
Thursday Nov 8, 2018 16:31 - 16:53
Statistical approach for investigating change in mutational process during cancer growth and development.
Richard Bonneau, New York University & Simons Foundation
Thursday Nov 8, 2018 16:59 - 17:33
Multi-task regulatory network inference applied to multi-study, multi-species and single cell genomic experimental designs.
